IRQ Conflicts and a USB Mouse
I recently wrestled with some USB configuration issues when updating my kernel from 2.6.25 to 2.6.28.4. There were several kinks that needed to be ironed out, these centered around IRQ conflicts. The first of these was that the USB mouse and keyboard would not work at the login screen. To debug, I had to enable ssh at boot-time and remotely login to debug. Once this issue was resolved, then my USB mouse would mysteriously stop working after 10-15 minutes.
For the specific problem that ails you, the two best ways to resolve this issue will likely be dmesg and /proc/interupts. Granted, tracing through the output of dmesg may take some time and is far from glamous. For my particular situation, here is how I resolved the issue.
Below is the result of /proc/interupts for the 2.6.25 Kernel (which worked):
CPU0 CPU1
0: 24 0 XT-PIC-XT timer
1: 2 0 XT-PIC-XT i8042
2: 0 0 XT-PIC-XT cascade
5: 1179 620 XT-PIC-XT ehci_hcd:usb1, eth0
7: 6526 75918 XT-PIC-XT
8: 1 0 XT-PIC-XT rtc
9: 0 0 XT-PIC-XT acpi
10: 5070 999 XT-PIC-XT sata_nv, HDA Intel
11: 63483 4594 XT-PIC-XT sata_nv, nvidia
12: 4 0 XT-PIC-XT i8042
15: 6176 310 XT-PIC-XT ohci_hcd:usb2
NMI: 0 0 Non-maskable interrupts
LOC: 304278 304257 Local timer interrupts
RES: 7399 10427 Rescheduling interrupts
CAL: 18 1215 function call interrupts
TLB: 1036 1655 TLB shootdowns
TRM: 0 0 Thermal event interrupts
THR: 0 0 Threshold APIC interrupts
SPU: 0 0 Spurious interrupts
ERR: 82444
The first attempt at using 2.6.28 resulted in an dmesg output of:
Probing IDE interface ide0...
ide0 at 0x1f0-0x1f7,0x3f6 on irq 14
Probing IDE interface ide1...
ide1 at 0x170-0x177,0x376 on irq 15
ide-gd driver 1.18
ide-cd driver 5.00
Some new default (?) kernel option added in IDE support to the kernel for my arch which was causing an IRQ conflict. Given that there is only SATA in box, I just had to find and disable this kernel option. By turning this off and USB/HID on, the keyboard started working. The mouse only somewhat.
The mouse issue was odd. Initially, the mouse worked fine for a few minutes. Then after some period of time (usually 10-15 minutes, but one time up to an hour), the wirelss mouse stopped working. This seemed odd, given that the wireless keyboard still worked. The next step was to look at the Linux USB HowTo.
Section "InputDevice"
Identifier "USB Mice"
Driver "mouse"
Option "Protocol" "IMPS/2"
Option "Device" "/dev/input/mice"
Option "ZAxisMapping" "4 5"
Option "Buttons" "5"
EndSection
In the /etc/X11/xorg.conf, it seems that the xorg settings had somehow changed for the Protocol option. Editing this to IMPS/2 and restarting the X-server resolved this issue.